rs30285757 SNP Detail

Summary

• ID
  rs30285757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84127961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTAATATTC ATTTATCAGT GAGTGCATAT CATGTCCAAA
  CAGGGTTTCT ATAACACTGC CTGCCTGTCA CCTGCCTTCC TGCACCTTGA CCTTCAGTTC
  Y
  AGCACTGAGA CGCTCCCTCA GGTCATGCTC CTTCTTCAGT TGATACTAAT CCTTGTACTC
  TAAAATGATT GCCAATGATG GGCTTTAAAA ATGCTTTAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49617555	NES12950565	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30285757					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49617555	NES12950565	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84127961 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Tssr12589	transcription start site region 12589	1868 bp upstream
Tssr12590	transcription start site region 12590	35 bp upstream
Tssr12591	transcription start site region 12591	236 bp downstream
Tssr12592	transcription start site region 12592	594 bp downstream
Tssr12593	transcription start site region 12593	629 bp downstream
Tssr12594	transcription start site region 12594	681 bp downstream
Tssr12595	transcription start site region 12595	1063 bp downstream