rs30285760 SNP Detail

Summary

• ID
  rs30285760
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84127068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCA CTGAGAAGGT GCAGGATGAC
  W
  TCTGAGTAAA ACCAGACTTG AGGCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49617558	NES12950579	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	T	T	T	T	T	T	T		T		A	T	T		T
ss144834828	ENSMUSSNP2266378	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T											T
ss319823977	CHEV_1_84145922	CHEVERUD	SCREENING_POP	f	SNP												A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30285760					SNP	T	T	T	A	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49617558	NES12950579	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84127068 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Tssr12588	transcription start site region 12588	1947 bp upstream
Tssr12589	transcription start site region 12589	975 bp upstream
Tssr12590	transcription start site region 12590	843 bp downstream
Tssr12591	transcription start site region 12591	1129 bp downstream
Tssr12592	transcription start site region 12592	1487 bp downstream
Tssr12593	transcription start site region 12593	1522 bp downstream
Tssr12594	transcription start site region 12594	1574 bp downstream
Tssr12595	transcription start site region 12595	1956 bp downstream