rs30285848 SNP Detail

Summary

• ID
  rs30285848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41289180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAG AACAGTTACT TTTAGCTCCT
  Y
  GTATCAGCTG GCTAAAATGG AGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss46392262	mCV22637191	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss50700303	NES14258702	PERLEGEN	MM_PANEL2	f	SNP				T		C	C	C
ss322925126	CHEV_9_41185967	CHEVERUD	SCREENING_POP	f	SNP					T				T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30285848					SNP	T	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50700303	NES14258702	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41289180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21612	CpG island 21612	1086 bp distal
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677031	regulatory region 677031	1240 bp distal
Tssr84498	transcription start site region 84498	1478 bp downstream
Tssr84499	transcription start site region 84499	1450 bp downstream
Tssr84500	transcription start site region 84500	1399 bp downstream
Tssr84501	transcription start site region 84501	1387 bp downstream
Tssr84502	transcription start site region 84502	976 bp downstream
Tssr84503	transcription start site region 84503	548 bp upstream