rs30286209 SNP Detail

Summary

• ID
  rs30286209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77278339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAACGTTT AAAATGAAAT TAGAAAGCAA GACATTTATT
  CACATGTTTA TCAGAAAAAC AGGAGGCGTA TTAGTTATCT TTTTGGTAAT AAACCTTGGA
  Y
  ATGCACAAAA CTAGCATTTT TTAGAAAGGA AAGACTAATC TAATTGCCTT CTGTAATTAT
  GTTATTAACC TGAGGTAAAG GCTTATATAA CACAGCAATG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49119338	NES12423664	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30286209					SNP	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49119338	NES12423664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77278339 () rs orientation: forward

Symbol	Name	Function Class
Rr284990	regulatory region 284990	1627 bp distal
Rr284991	regulatory region 284991	663 bp proximal
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates
Tssr123275	transcription start site region 123275	1092 bp downstream