rs30286409 SNP Detail

Summary

• ID
  rs30286409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:88764517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCATGAAGT AAAAAAAACA AAACAAAACA AAAACAAAAA
  CAAAACCCTT CCCTAAAAAA TATGTGCCAC AGGAGTAAAA ATACATTTGA GAATCAACAG
  R
  AAAGACTATA AACCTTAAAG AAAGACATGA TTCAGTCCTA TTCATCCTAC AGAGAGGTGA
  AAACTTTATA GGTCAGGTGT AAAACATCAC AGAGTCATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47931777	NES12025266	PERLEGEN	MM_PANEL2	f	SNP		G	G	A	A	A	G
ss47931853	NES12033795	PERLEGEN	MM_PANEL2	f	SNP		G	G	A	A	A	G
ss147243369	ENSMUSSNP6854840	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30286409					SNP	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47931777	NES12025266	PERLEGEN	MM_PANEL	f	SNP	A/G
ss47931853	NES12033795	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:88764517 () rs orientation: forward

Symbol	Name	Function Class
Gm66637	predicted gene, 66637	within coordinates
Slc5a8	solute carrier family 5 (iodide transporter), member 8	within coordinates