rs30289281 SNP Detail

Summary

• ID
  rs30289281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77197441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGAAAGAA AACCAAGAAA AGCTTGTTTT TCAGTAAGTC
  ATGCCAGCAT ACATAAGATA GTATTTTTCT TCCTTTAAAA TGTATCCTGC TTTGAACTCA
  Y
  TCAATCATAC TGCTTTCCAG CCTTTAGAGT AAAGTCAGCT ACATGAGAAC AAATTTTGAT
  GCATTAATTT TTACTTTATT AGTCTATATC TCCAACTGCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49119518	NES12425857	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30289281					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49119518	NES12425857	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77197441 () rs orientation: forward

Symbol	Name	Function Class
D13Mit231	DNA segment, Chr 13, Massachusetts Institute of Technology 231	1459 bp distal
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates
Tssr123272	transcription start site region 123272	1904 bp upstream
Tssr123273	transcription start site region 123273	1647 bp upstream