rs30290467 SNP Detail

Summary

• ID
  rs30290467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:60385686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACAAAT ACTTGATGAG
  GCCATTGTAA CTGGCACACA TTATCATTTC CCTGACCCTG GAACTCACTT AAGGTAGCCT
  GAGCAAGGGT CCCCATGGGG TAAGGATTTC TTCAGAATAC TCTCTGAATG GCATCCTGTG
  AGGGCAAGAA CCTCAACAGA TTATTTCCCT GGGAGAGCAG GAATCTAAAG GGCTTCAACT
  Y
  CAGCTGCTGT TACTACTGGG TTAACAAGTA ATGATATTCA AGGCATGACA TTGAAGACCA
  AGACCTCTGT CCCTCAAGGA CCTCATGGAA AGGGAAGAAG GTTACAAAAC ACTTGTTACT
  ATATCTGATC ACTGGTTTTG TTCCTTATCA ACACAGTGCT GTCTCTTCTA GTGGACTTCT
  GGCCTCAGTG AAAGAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39170723	mCV24382237	ABI	CRAMUS_MOUSE	f	SNP	T	T					T		C
ss52501552	NES15579425	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C		C	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30290467					SNP	T	T	T	T	T	C	T	C	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52501552	NES15579425	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:60385686 () rs orientation: forward

Symbol	Name	Function Class
Rr389732	regulatory region 389732	336 bp upstream