rs30290494 SNP Detail

Summary

• ID
  rs30290494
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57800227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGGTGC TGAGACCTTG
  TTTTTACTGC CTTATTTTTT TAAATCAGCA CAGAAAAAAA GTCCATTCCA AAAAACTCTT
  GACAACCAAC GTCACTATGA TGGCATCAAA TCAACAAAGC AGTAGATTAA AAAAAAACAA
  AAAAAAAACT GATGACAAGC AACAATCTTA GCGCATCATA TTTGATGTTA CTTTTGGTTT
  S
  CCTTCTCCCC CAGAAAAGCT AATTCAATTG ACTTGACTCA TTTTGAAGGC TTTTCCACTG
  CTGGCCCTTG AATGTAAAGC CTTAGAGTGT TGGCAGGTCT GCCACTTCTC TCATGTTCAT
  TTCCTCAATA AACATCGTTC GAATACAAAA ATATAGAAAA GAAAATGAAA AAATAAACAC
  AACCAGAAAG AACACCCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47932624	NES11649024	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30290494					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47932624	NES11649024	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57800227 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17487	CpG island 17487			1186 bp proximal
Rr399671	regulatory region 399671			within coordinates
Rr631165	regulatory region 631165			within coordinates
Rr631166	regulatory region 631166			245 bp proximal
Rr631167	regulatory region 631167			939 bp proximal
Rr631168	regulatory region 631168			1227 bp proximal
Rr631169	regulatory region 631169			1884 bp proximal
Tssr56734	transcription start site region 56734			470 bp upstream
Tssr56735	transcription start site region 56735			1243 bp upstream
Tssr56736	transcription start site region 56736			1295 bp upstream
Tssr56737	transcription start site region 56737			1403 bp upstream
Tssr61164	transcription start site region 61164			1391 bp downstream
Tssr61165	transcription start site region 61165			1813 bp downstream
Tssr61166	transcription start site region 61166			1902 bp downstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant