rs30290500 SNP Detail

Summary

• ID
  rs30290500
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57801555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACAAACC TCCAAACCCC
  AATCCATATT TTACACACCA GATTTTACAC ATCCACTCTT TTGCCTTTGA ATGAACCCGC
  TGGAGCAGGA AGGGTGGTTC GCGTCACAGG ATGTCGCAGT TCAGTCGACC GCAGCCCCGC
  TCTAACCCTG GCTGTACCTC GGCGGTGCTT CCACCCACCA TCAAGTTTCC GCGGCTTCAC
  M
  ACAGTACACC AACCACCCAA GCTCCCCGTG GGATTTTTCT CCTCGCCTCT AAAAGCCTGC
  ACTTCATCTC CAAAGGCAGA AATGTCCCTG TCCCTCCTAC CAGCTGCGGG AGGCGCCGCC
  CCAGGCCCCG AGAGACAGGG AGCGCGTGTG GACACGCACA AAGGTCCCTC CCGGGGACGC
  AAGCCCGAGC AAGCAGCGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47932630	NES11648783	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A	C	A	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30290500					SNP	C	A	A	A	A	A	C	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47932630	NES11648783	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57801555 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17487	CpG island 17487			within coordinates
Rr399671	regulatory region 399671			1294 bp downstream
Rr631165	regulatory region 631165			1210 bp distal
Rr631166	regulatory region 631166			814 bp distal
Rr631167	regulatory region 631167			within coordinates
Rr631168	regulatory region 631168			80 bp distal
Rr631169	regulatory region 631169			556 bp proximal
Tssr56734	transcription start site region 56734			847 bp downstream
Tssr56735	transcription start site region 56735			72 bp downstream
Tssr56736	transcription start site region 56736			13 bp downstream
Tssr56737	transcription start site region 56737			75 bp upstream
Tssr61164	transcription start site region 61164			63 bp downstream
Tssr61165	transcription start site region 61165			485 bp downstream
Tssr61166	transcription start site region 61166			574 bp downstream
Tssr61167	transcription start site region 61167			712 bp downstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant