rs30290501 SNP Detail

Summary

• ID
  rs30290501
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57801818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCTCCA AAGGCAGAAA
  TGTCCCTGTC CCTCCTACCA GCTGCGGGAG GCGCCGCCCC AGGCCCCGAG AGACAGGGAG
  CGCGTGTGGA CACGCACAAA GGTCCCTCCC GGGGACGCAA GCCCGAGCAA GCAGCGAGAG
  GGAAACGGGG CGCCGACAGG AGGAGGAGGC GCGCAGGGAG GACAGGGGGT CCCGGCATCA
  S
  ACCCCTCCGC CGCCCCACAC CGCAGACTCG CGAGCTCCGC AATGCCCTTC CCGCGTCCCT
  TCTCCCGAAG GCGCGGGGAA CCGGCGGCCC TACCTCCACT AGCAGCCCGA GCAGCAGCGC
  CGCCACCCTG CCGAGCCGGC GGCCCATGGC TCCAGCGAGG ACCGTCCGAA GCCGGGCTGT
  ACGGCCAGCT CAGGGCCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47932632	NES11648784	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30290501					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47932632	NES11648784	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57801818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17487	CpG island 17487			within coordinates
Rr399671	regulatory region 399671			1557 bp downstream
Rr631165	regulatory region 631165			1473 bp distal
Rr631166	regulatory region 631166			1077 bp distal
Rr631167	regulatory region 631167			within coordinates
Rr631168	regulatory region 631168			343 bp distal
Rr631169	regulatory region 631169			293 bp proximal
Tssr56734	transcription start site region 56734			1110 bp downstream
Tssr56735	transcription start site region 56735			335 bp downstream
Tssr56736	transcription start site region 56736			276 bp downstream
Tssr56737	transcription start site region 56737			184 bp downstream
Tssr61164	transcription start site region 61164			170 bp upstream
Tssr61165	transcription start site region 61165			222 bp downstream
Tssr61166	transcription start site region 61166			311 bp downstream
Tssr61167	transcription start site region 61167			449 bp downstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant