rs30290503 SNP Detail

Summary

• ID
  rs30290503
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57802231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGGCGGGT GGACTCCGGG
  GATACGAGCT GAAGCCGGCA GAAGGACGCG CGGCAAGCCG GCGGAGCTCG AGGACGTGCC
  AGGCCGCCCT CGCCGCGCGC CCCCGATCCA CCTCACGGGC GCGCGCTCGT GGGCTCGGAG
  CCTGCAAAGT CTGTGGAGCG CGCTGCGGGA CGCGGAGACA GCGGGGCTGG GTGAGAAGAC
  K
  GCCTGATGTC TCCTCTCTCG GAAGAGACCA TCTTGTCTCA CCTTGATAGT TCTGGGAAGG
  TTTTTATAGG ACACCGGGTT TGGGAGCTGG GGGATGGATA CGGATGGACC CATCACTGGG
  TCTTCCTGAA GTTTCTAGCC ACGGAGACAT TCTCACTGAG GTTCCTGTAG GTAAGGTGGG
  AGGTCCACTC CGCCCCAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47932634	NES11648785	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30290503					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47932634	NES11648785	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57802231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17487	CpG island 17487	within coordinates
Rr399671	regulatory region 399671	1970 bp downstream
Rr631165	regulatory region 631165	1886 bp distal
Rr631166	regulatory region 631166	1490 bp distal
Rr631167	regulatory region 631167	121 bp distal
Rr631168	regulatory region 631168	756 bp distal
Rr631169	regulatory region 631169	within coordinates
Tssr56734	transcription start site region 56734	1523 bp downstream
Tssr56735	transcription start site region 56735	748 bp downstream
Tssr56736	transcription start site region 56736	689 bp downstream
Tssr56737	transcription start site region 56737	597 bp downstream
Tssr61164	transcription start site region 61164	583 bp upstream
Tssr61165	transcription start site region 61165	105 bp upstream
Tssr61166	transcription start site region 61166	80 bp upstream
Tssr61167	transcription start site region 61167	36 bp downstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1	121 bp upstream