rs30293043 SNP Detail

Summary

• ID
  rs30293043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88382697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTTGAC TACACAGTAG
  AAGCCATTCT GTAATATTCC ATCTGAGGAT GCTCTGAAGA CCAGCCCTGC TGTAGGCCGG
  CACTCAACAC CAGTGGCAAT GATGACGTCT CATTACTGAA GAACTAACTT GGCTCCTTTC
  CTGTTCCAAC AGTCCTTTGG TTTTCCCTAA CTGAGCTGGC TAGAGGGTCA GGATGTTAAT
  Y
  TTTAGCGAGT GCTGTGCCTT CCTCTGCAGG TAGGACTACC AGCCTTCAAC TCCTTCTGCT
  CTTGGGTGGG GAGACCCCAG ACCACAGCAG CCTCTGTGCT TCCCTGTGCT CCAGGGAGTG
  ACAGTCAGCA GCCAGAGGTC TGTGGCTCCC AGTGGTCAGA GGTCTGTGGC TCCCAGCGGC
  TTGCTGGGAG AGTACTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49620029	NES12954523	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30293043					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49620029	NES12954523	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88382697 () rs orientation: forward

Symbol	Name	Function Class
Gm29538	predicted gene 29538	within coordinates
Rr414979	regulatory region 414979	1573 bp proximal
Rr414980	regulatory region 414980	1815 bp proximal
Rr414981	regulatory region 414981	1899 bp proximal
Tssr7971	transcription start site region 7971	1573 bp downstream