rs30293890 SNP Detail

Summary

• ID
  rs30293890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88381017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCGTTTAT AGATAAAGCC
  ATGAGTTTAG GGAAGATGTA GCTTGTACCA AATAACTGGA TTGACTTCGC AGTCAAGTTT
  CTATTGTGTT TGCAGTACTG TGGTTTCCCC ACATTGGGCC TGTCCTGTGT GGTGACCCTG
  ACCTAGGATC TTGGGCTTTT AGTCAGAGGG AAGGAAGCAG GCTGTGAACT GAGGTTGGAG
  Y
  GTTTGGAATA ATATAGGCCA GCTGACTGGA TTCCTTGGCA GTGAATGGAC AAGCGTAAAA
  GCAGGCTCTG TGCAGGATAC TAGGGATACC TGGACAGACA GGACTAGACC CTGCAGGAAA
  GACGGTGCTG TGTGCTCACA CACAGAAGAG AAATCTGCAA ATCAACAAGG TAGGCAGAAC
  AGCAGCTCTT GGTGAAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49620036	NES12954552	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30293890					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49620036	NES12954552	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88381017 () rs orientation: forward

Symbol	Name	Function Class
Gm29538	predicted gene 29538	within coordinates
Tssr7971	transcription start site region 7971	82 bp upstream