rs30298160 SNP Detail

Summary

• ID
  rs30298160
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57799082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGGCTG GGGGTAGGGT
  ATAGGGGACT TTCGGGATAG CATTCGAAAT GTAAATCAAG GAAATATATA ATTAAAAAAA
  AACTAAAACT AAACTAAAAT AAAATAAAAC GAGAAAGCTC AGACTAAAAC CTTACATTAA
  ATTTGCATGT GACAAATCAT TAAATGTTTT TGTTGTTGTT GCTGTTTTGA GACACAGCTT
  M
  TCCTTTTAGC CTTGGCTGTC CTGGCACTCA ACAGGGCACA GCTCTCTACC GGAAATCAGG
  CACTGAAGAT AATCATCATG TAAACGGGAG CGACCTAGAA AACACATGTT ACCAGCATCC
  AGATAGTGAA CTTCAGGAAT GCATCAGAGC TCAGCCCTTG GGAGGTTGTC AGCCCTTCAA
  AGAAGTTTTA AATTCCCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47932616	NES11649059	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	C	C	C	C	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30298160					SNP	A	C	C	C	C	C	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47932616	NES11649059	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57799082 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr399671	regulatory region 399671			879 bp upstream
Rr631165	regulatory region 631165			453 bp proximal
Rr631166	regulatory region 631166			1390 bp proximal
Tssr56734	transcription start site region 56734			1615 bp upstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant