rs30298162 SNP Detail

Summary

• ID
  rs30298162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57799117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGCATTC GAAATGTAAA
  TCAAGGAAAT ATATAATTAA AAAAAAACTA AAACTAAACT AAAATAAAAT AAAACGAGAA
  AGCTCAGACT AAAACCTTAC ATTAAATTTG CATGTGACAA ATCATTAAAT GTTTTTGTTG
  TTGTTGCTGT TTTGAGACAC AGCTTCTCCT TTTAGCCTTG GCTGTCCTGG CACTCAACAG
  R
  GCACAGCTCT CTACCGGAAA TCAGGCACTG AAGATAATCA TCATGTAAAC GGGAGCGACC
  TAGAAAACAC ATGTTACCAG CATCCAGATA GTGAACTTCA GGAATGCATC AGAGCTCAGC
  CCTTGGGAGG TTGTCAGCCC TTCAAAGAAG TTTTAAATTC CCCATTAAGA TAAAACAATT
  CAATCAGACA TGGTGACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45928726	mCV23275489	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss47932618	NES11649062	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G	G	G	A	G	A	A
ss133245437	ENSMUSSNP1943772	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30298162					SNP	A	G	G	G	G	G	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47932618	NES11649062	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57799117 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr399671	regulatory region 399671			844 bp upstream
Rr631165	regulatory region 631165			418 bp proximal
Rr631166	regulatory region 631166			1355 bp proximal
Tssr56734	transcription start site region 56734			1580 bp upstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant