rs30298179 SNP Detail

Summary

• ID
  rs30298179
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88205144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCGTCTC GTAGGTTAAC
  GTCCTCATCT CCACCAACGG GTCGTCCTCA AAGGGCTGGT TGTACTGCGG GGAAGGGAGA
  GCTGGTCAGA CTCCGGGGCG CTGGATCCCC GCCCACCGCG CCCTGCCCGC CTCGGCCGCC
  GTCCCAGCCT ACCTTCGCTA TCAGCCGCTT CATTAACGTC TGGAAGCGGC TACTGCTTTC
  M
  TTAAGCTGCT GATGCAGCCT GCGGTCCTGC CGACCCATAG ACTCCATGGC GTACGTGGCT
  CTCTGCCCGG CACTGCACCC GCCCAAGCCC GTCCACAGAT CAAACGTGGC GCCCCGCGCG
  CTAATAGGGT CTTTCAAAAG TATTTACGCA ACCGATCCTG CCCGCGTTTC CGGCCGCCGC
  TCCCAGGGAG CACTTCCGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss49620965	NES12946733	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	C	A	A
ss144900302	ENSMUSSNP3518018	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs30298179					SNP	C	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49620965	NES12946733	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88205144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	within coordinates
Cpgi541	CpG island 541	725 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Tssr12873	transcription start site region 12873	128 bp upstream
Tssr12874	transcription start site region 12874	48 bp downstream
Tssr12875	transcription start site region 12875	88 bp downstream