rs30298180 SNP Detail

Summary

• ID
  rs30298180
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88205100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCCCGCCCAC CGCGCCCTGC CCGCCTCGGC CGCCGTCCCA GCCTACCTTC
  K
  CTATCAGCCG CTTCATTAAC GTCTGGAAGC GGCTACTGCT TTCCTTAAGC           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49620966	NES12946732	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G	G	G	G	G	T	G
ss144900292	ENSMUSSNP3065504	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30298180					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49620966	NES12946732	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88205100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	within coordinates
Cpgi541	CpG island 541	769 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr29783	regulatory region 29783	within coordinates
Tssr12873	transcription start site region 12873	84 bp upstream
Tssr12874	transcription start site region 12874	92 bp downstream
Tssr12875	transcription start site region 12875	132 bp downstream