rs30298994 SNP Detail

Summary

• ID
  rs30298994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57799224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCATGTGA CAAATCATTA
  AATGTTTTTG TTGTTGTTGC TGTTTTGAGA CACAGCTTCT CCTTTTAGCC TTGGCTGTCC
  TGGCACTCAA CAGGGCACAG CTCTCTACCG GAAATCAGGC ACTGAAGATA ATCATCATGT
  AAACGGGAGC GACCTAGAAA ACACATGTTA CCAGCATCCA GATAGTGAAC TTCAGGAATG
  Y
  ATCAGAGCTC AGCCCTTGGG AGGTTGTCAG CCCTTCAAAG AAGTTTTAAA TTCCCCATTA
  AGATAAAACA ATTCAATCAG ACATGGTGAC CCATCCCTGT AATCATAGCA TGTGGGAGAC
  TGAGGCCTAG GCTACATAGG AAGATCCTGT CTTAAGAAGG ACTGTAGCTG AATAGAGTAT
  TGGCCCAGCA TGTGTAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45919262	mCV23275490	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C	C
ss47932620	NES11649064	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	T	T	C	T	T	C
ss133245440	ENSMUSSNP1484831	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30298994					SNP	T	T	C	C	C	C	C	C	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47932620	NES11649064	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57799224 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr399671	regulatory region 399671			737 bp upstream
Rr631165	regulatory region 631165			311 bp proximal
Rr631166	regulatory region 631166			1248 bp proximal
Rr631167	regulatory region 631167			1942 bp proximal
Tssr56734	transcription start site region 56734			1473 bp upstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant