rs30298996 SNP Detail

Summary

• ID
  rs30298996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57799937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGTGGG CTTTTTCCCT
  GACTGAAAGT ATTCAGTGGT CTTTCAAATC TCCCACAAGA AGCGGGGGAG GGTCCTATAG
  TAGGAACCAA TCAGCTTGCC TTTCTTTGTC TGGATTACCC AATCCCCTGT AGTAGCCTGA
  ATCAGCCAAC TAAGAGGGAA AGGAAGAACT CACCCCATCC CCAAACATAA AACTTTAGCA
  Y
  TGCCTGACAC AACTCTGATT TCCAGGTCTT CTGCATTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCCCTCCCTC CCTCCCTCCC TCCAGGTGCT GAGACCTTGT TTTTACTGCC
  TTATTTTTTT AAATCAGCAC AGAAAAAAAG TCCATTCCAA AAAACTCTTG ACAACCAACG
  TCACTATGAT GGCATCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47932622	NES11649022	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30298996					SNP	T	C	C	C	C	C	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47932622	NES11649022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57799937 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17487	CpG island 17487			1476 bp proximal
Rr399671	regulatory region 399671			24 bp upstream
Rr631165	regulatory region 631165			within coordinates
Rr631166	regulatory region 631166			535 bp proximal
Rr631167	regulatory region 631167			1229 bp proximal
Rr631168	regulatory region 631168			1517 bp proximal
Tssr56734	transcription start site region 56734			760 bp upstream
Tssr56735	transcription start site region 56735			1533 bp upstream
Tssr56736	transcription start site region 56736			1585 bp upstream
Tssr56737	transcription start site region 56737			1693 bp upstream
Tssr61164	transcription start site region 61164			1681 bp downstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant