rs30299026 SNP Detail

Summary

• ID
  rs30299026
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88204133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGGAGGGCTC TTATACCAAC TTGTATAGTC TCAAACTCTT
  CAGCAACTTC ACTGTTCTCA TATAACTGAC ATCAGTTATA TATCACTGAC AGAATATATC
  M
  TTGAAGACAG ATGGGCAGTC CAAAATACTC CAGACACTGC CTACCCCTTC ACAAACAGCC
  GCAAGAGCAC AGAAAAGCCA AGAGTCAGAC AGCACACTTA T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49620972	NES12946726	PERLEGEN	MM_PANEL2	f	SNP	A		C		C	C	C		C	A	A		C	C	A
ss63352197	NES17507600	PERLEGEN	MM_PANEL2	f	SNP				C		C	C	C	C	A		C	C	C	A	C
ss144900196	ENSMUSSNP1489102	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30299026					SNP	A	A	C	C	C	C	C	C	C	A	A	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49620972	NES12946726	PERLEGEN	MM_PANEL	f	SNP	A/C
ss63352197	NES17507600	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88204133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	469 bp proximal
Cpgi541	CpG island 541	1736 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Tssr12873	transcription start site region 12873	853 bp downstream
Tssr12874	transcription start site region 12874	1059 bp downstream
Tssr12875	transcription start site region 12875	1099 bp downstream