rs30299027 SNP Detail

Summary

• ID
  rs30299027
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88204113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TATGTGTTGG CCAGACCTCA GGGAGGGCTC TTATACCAAC
  TTGTATAGTC TCAAACTCTT CAGCAACTTC ACTGTTCTCA TATAACTGAC ATCAGTTATA
  K
  ATCACTGACA GAATATATCA TTGAAGACAG ATGGGCAGTC CAAAATACTC CAGACACTGC
  CTACCCCTTC ACAAACAGCC GCAAGAGCAC AGAAAAGCCA A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49620973	NES12946725	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30299027					SNP	G	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49620973	NES12946725	PERLEGEN	MM_PANEL	f	SNP	G/T
ss144900193	ENSMUSSNP2026187	ENSEMBL	ENSEMBL_Sanger	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88204113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	489 bp proximal
Cpgi541	CpG island 541	1756 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr29783	regulatory region 29783	within coordinates
Tssr12873	transcription start site region 12873	873 bp downstream
Tssr12874	transcription start site region 12874	1079 bp downstream
Tssr12875	transcription start site region 12875	1119 bp downstream