rs30299030 SNP Detail

Summary

• ID
  rs30299030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88203643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGTTTCG TATTTGCAAC
  CCGTGTGGCA TGTAACTCCC ATACCCTCTT AAAAGCCCAC AGGACAGACT TACCATGTCC
  ACTGTACAGA CAGATATGCG AAGAGGAAAG TTCAGATGAC TAACCCAGCT CTCTGCTCAT
  GAAGTGGAAC CAGCATGTGA ATTCTGGGAG GTCTGATAGC ACTGACCACT GTGGGACATG
  R
  CCTTTCCAGA GGACACTGAT GCTCAACTAC AACGGCTAAG TCAAATCAAG GCTTTGCTGA
  ATGGCCCTCT CCGTGGAATT CTACATTTAA TCGCATAAAG TGCTAATGTT GCATGTTTGA
  AACTGAACTC TACAATACGT GCTAAGTGCA TGCCCAGGTG AACTGTCAAC ACACACAAAT
  GATTCCCTCC TGTTCTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49620976	NES12946720	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	A	G	G		G	G	G	G
ss144900159	ENSMUSSNP1380516	ENSEMBL	ENSEMBL_Sanger	f	SNP		G											G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30299030					SNP	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49620976	NES12946720	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88203643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	959 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr23451	regulatory region 23451	1842 bp distal
Rr29783	regulatory region 29783	within coordinates
Tssr12871	transcription start site region 12871	1782 bp upstream
Tssr12872	transcription start site region 12872	1737 bp upstream
Tssr12873	transcription start site region 12873	1343 bp downstream
Tssr12874	transcription start site region 12874	1549 bp downstream
Tssr12875	transcription start site region 12875	1589 bp downstream