rs30299914 SNP Detail

Summary

• ID
  rs30299914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88202734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGGGGTAAGG GCAGAGGAGG AGGTCATCCC ATCACAGAGC
  ACACCGGCCT CCGGGCTCTC TGGCGCTGGG ATGCAGTCCC ACCAACACAC TAGAGTAAAG
  Y
  AGGAAGGCGG CAAACCTGAT GGCAAATACC TGAGTGTATT CCTTGTCTTC CTTCTTCATC
  AGCTTTCCTC CCCAAACTCT CAACCCTTAA GAAACAAAGG T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49620980	NES12946713	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	C	C	T	T	C	C
ss144900078	ENSMUSSNP2622276	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30299914					SNP	C	T	T	T	T	T	C	?	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49620980	NES12946713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88202734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	1868 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr23451	regulatory region 23451	933 bp distal
Rr29783	regulatory region 29783	466 bp proximal
Tssr12871	transcription start site region 12871	873 bp upstream
Tssr12872	transcription start site region 12872	828 bp upstream