rs30299915 SNP Detail

Summary

• ID
  rs30299915
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88202687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGAGCCAGGA GGTGGAAGAA ACACTTCTCA GTTTATCTTC
  ACACAGGAGG GGTAAGGGCA GAGGAGGAGG TCATCCCATC ACAGAGCACA CCGGCCTCCG
  K
  GCTCTCTGGC GCTGGGATGC AGTCCCACCA ACACACTAGA GTAAAGCAGG AAGGCGGCAA
  ACCTGATGGC AAATACCTGA GTGTATTCCT TGTCTTCCTT C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49620981	NES12946711	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	G	T	G	G	T	T	T	G	T
ss63352212	NES17507594	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T		T	G	G	T	T	T	G	T
ss144900074	ENSMUSSNP2418884	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30299915					SNP	G	T	T	T	T	T	G	T	G	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49620981	NES12946711	PERLEGEN	MM_PANEL	f	SNP	G/T
ss63352212	NES17507594	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88202687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	1915 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr23451	regulatory region 23451	886 bp distal
Rr29783	regulatory region 29783	513 bp proximal
Tssr12871	transcription start site region 12871	826 bp upstream
Tssr12872	transcription start site region 12872	781 bp upstream