rs30301373 SNP Detail

Summary

• ID
  rs30301373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60744311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA GTAGCAGCCT CTGCTCCAGT
  Y
  AGACCCAGAG GCCTCACAGC AGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39667329	mCV24046437	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						T
ss50418258	NES13463269	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T	C	T	T	C		C	C	T		C
ss147248050	ENSMUSSNP1984159	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss325640175	CHEV_18_60770893	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30301373					SNP	T	T	C	T	C	T	T	C	T	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418258	NES13463269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60744311 () rs orientation: forward

Symbol	Name	Function Class
Rr538593	regulatory region 538593	1145 bp distal
Rr538594	regulatory region 538594	898 bp distal
Synpo	synaptopodin	within coordinates
Tssr153456	transcription start site region 153456	1171 bp upstream
Tssr153457	transcription start site region 153457	1127 bp upstream