rs30301544 SNP Detail

Summary

• ID
  rs30301544
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88193292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTGTGGG GAGTCTGGAT
  TTAGTCTCTT CAAGTGCTCT GATTGACAGG GAAGAGCTGC AGCAGCTTTC ATTGGCGATA
  CTCTGCCACA CGAAGTCACC TTCGCCCGCT GCGGTGACAG ACAATACTTC TGATAAAGTC
  TGTTGAATTC TTTTTTAAGC TCATCATAGT TATCCTTCCC ACAGCCTGGA GAGCCTATGC
  W
  TGGTGCTGAA ATAGCTGTAC TGGGCCACAC TGCCTTACCA GTAGGTTCAG AATTGTGCTC
  TTGAAGGCCA GAGCTCAGCT GAGAATGGCT GGGGCTCCGT GACGGGCTGC CCTCTGGAGA
  GGGACAGCTC CTTAGAAGAC AGCTCTTTGT TTTGACAGAC TTTCCATTTC CCCTCAGGTC
  TTCTAAAGCT TCACCTGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49621000	NES12946952	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	T	A	T	T	A	A		T	A	A	A
ss144899406	ENSMUSSNP7051628	ENSEMBL	ENSEMBL_Sanger	f	SNP		A										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30301544					SNP	T	A	A	T	A	T	A	T	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49621000	NES12946952	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88193292 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	909 bp proximal
Rr28029	regulatory region 28029	1454 bp proximal
Rr28030	regulatory region 28030	1960 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	705 bp upstream