rs30301550 SNP Detail

Summary

• ID
  rs30301550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88187289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG CTGTCTGCCC ATTATCTGAA
  R
  AAGATGGACC TTGTGGGACT TCGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49621009	NES12947103	PERLEGEN	MM_PANEL2	f	SNP		G	A	G	A	G	A	A	G	G	A	G
ss144898873	ENSMUSSNP3940626	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30301550					SNP	A	G	A	G	A	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49621009	NES12947103	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88187289 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	289 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	442 bp downstream
Tssr7959	transcription start site region 7959	422 bp downstream
Tssr7960	transcription start site region 7960	399 bp downstream
Tssr7961	transcription start site region 7961	370 bp downstream
Tssr7962	transcription start site region 7962	210 bp downstream
Tssr7963	transcription start site region 7963	180 bp downstream
Tssr7964	transcription start site region 7964	153 bp downstream
Tssr7965	transcription start site region 7965	129 bp downstream