rs30301687 SNP Detail

Summary

• ID
  rs30301687
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9672502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGCACA AATCATGGCC
  CCTGTGTCAT GCTTATTTTA TCCATTTGTC AGCTGCTGTG ACGCAGTGAA TTATGTGTAA
  GAATTCCAAA GTCATGCCCT ACTGTGTTCT AGATTAGCAC CTGGCACAAA GTAGGTGCTC
  AATAAGTATC TGTCGAACAC ATGACATATA GAAATGTAAA TTTATTTGTT ATGTTCCATT
  W
  AAAAAAATCT CTTGGGATAC AGTGTCAGGA TATCTCTAAG GTGATGAAAA AAAAGAAGAT
  AAATTATACC ACAGTATATT CAGCATGTAA CTTCTAAGAA GTTGTATGCA ATGTACTATA
  AAATTTGTGA GCAAAGCAAT GTGTTAGAAA TTTGAAAAAA TTTGAATTTA TTTGGAGATG
  TGAAAAATCT CTGCTAATGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45415288	mCV23605682	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A	A
ss134576763	ENSMUSSNP5525421	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		A
ss320651673	CHEV_3_9607442	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30301687					SNP	A	A	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9672502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	1152 bp proximal
Gm56803	predicted gene, 56803	1321 bp upstream
Rr78141	regulatory region 78141	298 bp proximal
Tssr28346	transcription start site region 28346	1361 bp upstream
Tssr28347	transcription start site region 28347	1384 bp upstream
Zfp704	zinc finger protein 704	within coordinates