rs30302652 SNP Detail

Summary

• ID
  rs30302652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107353384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCCTGGC AGGCGCATAT
  TCTCATTTCC CCTCGGGTCT GGCTCAGGTA GGCTCTTGAT GAGTCTGCAT TCCTCAGAGA
  GTACCTGGCT AGTAGGGATA ATGGGTGGTG GCTCTAGTGC CAGACATACT CAGAAGTGTC
  TCTGCCTTTC TCTCTAGACC ACTTAAGGCA ATTACTCTTT TTCCTCAGGC ACCCAGGCCA
  Y
  GCTGAAGGGC TTGGAGCAGG ACTCTCTTAT GTCTAGGAAG ATAAAGAAAA GAGCTCCAAT
  TCAAGTCTTC CCTGTGGAGA CCAACTTGCC TTTTTTGGAG AGTGGCACAA TCACTATGGG
  CCTGACTGGA TGTGATAGAG TTACCTGGCC TAAGACAGTG GCTCTGGCAT TGGCCACTCA
  AAGTCCCAGT GTGGCCAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45415404	mCV24801942	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss46855671	NES10710865	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T		C	C	T	C	T	T	C
ss135584080	ENSMUSSNP3812683	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30302652					SNP	T	T	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855671	NES10710865	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107353384 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Intron
Rr582975	regulatory region 582975	832 bp proximal