rs30303024 SNP Detail

Summary

• ID
  rs30303024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88186078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGGACTG GGTTCCATCT
  AAAATTGGCC TTAAGCCCCT TTTCACGGCT TCCTGTGGCT AGCTGCTAGG GCTGTTGAGA
  GGGCTCGGCT TGGTCTGTCA CATCTCTGTA AGGTCCCAGA TCCCAAGAGT GGGAAGAATA
  GGGTGGATGA AGGTAGAGTA GGAAGCCTGT CCATCCCAAC TGAGCTCCTG GCTTCATCTC
  Y
  GGTTGCCATA AAGGCAAAGG TGTTGGCTGT AGGGGCATGT GAGGGGCACC TGCCCCCCCC
  CCCCCGGGGC TCACTACGGA TGCATGAGCG AGCTCCCAGG GGCTGCCAGC CTGACTCTTC
  TTTGCTGTAG AGCCCTTTCT GGGGCTGCTC TCTCTCTCCT CAGGGGAGAT TCCACCCAGT
  GGTCTGCTTG TTGACCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49621010	NES12947280	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	T	C		T	C	T	C	C
ss144898772	ENSMUSSNP2191658	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30303024					SNP	C	C	T	C	T	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49621010	NES12947280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88186078 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	523 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	754 bp upstream
Tssr7959	transcription start site region 7959	776 bp upstream
Tssr7960	transcription start site region 7960	791 bp upstream
Tssr7961	transcription start site region 7961	838 bp upstream
Tssr7962	transcription start site region 7962	992 bp upstream
Tssr7963	transcription start site region 7963	1020 bp upstream
Tssr7964	transcription start site region 7964	1035 bp upstream
Tssr7965	transcription start site region 7965	1071 bp upstream