rs30303402 SNP Detail

Summary

• ID
  rs30303402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130552431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACTTGAA GGCAGTAGGT GAACTTTAGG TCTCCGCGGC
  CGAGGTGGAA ATGGGTTTAT TCTGAGAACC ATGGGCCACA CTTAGACCGG TGAGTTGAAA
  R
  CGACATCACC AAGGAAGCCA GCAGGGACTC TGATTGCTTT GCGGTCTCTG GAAATGGCTT
  TATACGGGCT TTCAACTTGC AGGTGGGTAT CTGCCGGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45416294	mCV22960161	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		A
ss61080250	NES16598321	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A		G	A	G	A	G	G	G	G	G
ss135899329	ENSMUSSNP3097311	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30303402					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080250	NES16598321	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130552431 () rs orientation: forward

Symbol	Name	Function Class
Gm42997	predicted gene 42997	within coordinates
Gm43522	predicted gene 43522	1508 bp upstream
Gm43524	predicted gene 43524	1024 bp downstream
Gm65129	predicted gene, 65129	within coordinates
Rr585206	regulatory region 585206	within coordinates
Rr585207	regulatory region 585207	1912 bp proximal