rs30303632 SNP Detail

Summary

• ID
  rs30303632
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23117831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTATGGGT TAAGATAGCT
  TCAAGACAGA GCGAATTTAG AGTCAAAGGC GCCCAAGGAA GTAGGAGGTT TAGCAAAATG
  CCAAGATGGC GGTGCTTTTG TGTAAGAACC ATTTAATACG GAACCGGATC TTTTGTTAGC
  TGTGAAAAAT TTTAGATGAA TTTCTCTTGG TTAATGTGTG GGGTGAAAGA ACTTTTAAAC
  R
  TCTAAGTGCT GCATTCCAAA CAAGAACGAA TTGATGCTGT CTCATCCGAG TCTGTCCTTG
  GACAACGTGG CCTGCCATAT CGAGGGTTTA AAATTTGACT CACACTTAGT TTATTAAGCA
  CCCCGTCCTT CCATCTATAT TTTAGAGTTA GCACCAGCAA CACAAATATG AAAAGATCTG
  TCCGATTCAC TTCTGCTCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39668338	mCV22350222	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss325768032	CHEV_19_23214957	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30303632					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23117831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	187 bp proximal
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	within coordinates
Klf9	Kruppel-like transcription factor 9	759 bp upstream
Rr405898	regulatory region 405898	133 bp upstream
Rr545290	regulatory region 545290	314 bp distal
Rr545291	regulatory region 545291	within coordinates
Rr545292	regulatory region 545292	637 bp proximal
Tssr155578	transcription start site region 155578	356 bp downstream
Tssr155579	transcription start site region 155579	355 bp upstream
Tssr155580	transcription start site region 155580	473 bp upstream
Tssr155581	transcription start site region 155581	489 bp upstream
Tssr155582	transcription start site region 155582	512 bp upstream
Tssr155583	transcription start site region 155583	552 bp upstream
Tssr155584	transcription start site region 155584	597 bp upstream
Tssr155585	transcription start site region 155585	659 bp upstream
Tssr155586	transcription start site region 155586	716 bp upstream
Tssr155587	transcription start site region 155587	1175 bp upstream
Tssr155588	transcription start site region 155588	1209 bp upstream
Tssr158621	transcription start site region 158621	170 bp downstream
Tssr158622	transcription start site region 158622	500 bp downstream
Tssr158623	transcription start site region 158623	1589 bp downstream
Tssr158624	transcription start site region 158624	1903 bp downstream