rs30304479 SNP Detail

Summary

• ID
  rs30304479
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68914091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAATTTTT ACTTTATAAA
  GTGTGTCAGT GTTGGGTGAC GCGGGCATAT GTACATGAGT GCAGGTGCCC CTGGAGGGCA
  TGAACCTCGA GCATCCCATT GTGGGTGCTG AAAACCAAAC TTGGGTTCTA CACAAGAAAA
  AAATTGCTGG GCCCCCTAGA TTGCCTTTAA AGAGAAGGTA TAATTGAGAG CGTAGAGCAG
  K
  CGGAGGGTAG AAATTAAGAG CTACTGTGAA ATTCCTGTCA CCATGTTACT GAAGTTTGTG
  AGTTTCTTAA GCTGAGCCAT GTGGAGAGTT GGATTTTCGA TTGTTAGGGT TGCATCTCCT
  GCATCAGGGA ATCCGTTTGT TGCAAGGTTT TCTTTATGGT ATATTGAGTA TTTTGACTCC
  TCTAAGTACA ATGTGTATAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45414536	mCV24988206	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss135264508	ENSMUSSNP3789223	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320791743	CHEV_3_68810680	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs30304479					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68914091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	271 bp distal
Rr397713	regulatory region 397713	1969 bp downstream
Rr578109	regulatory region 578109	1757 bp distal
Rr578110	regulatory region 578110	within coordinates
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29507	transcription start site region 29507	1737 bp downstream
Tssr29508	transcription start site region 29508	1616 bp downstream
Tssr29509	transcription start site region 29509	1445 bp downstream
Tssr29510	transcription start site region 29510	1404 bp downstream
Tssr29511	transcription start site region 29511	1273 bp downstream
Tssr29512	transcription start site region 29512	1016 bp downstream
Tssr29513	transcription start site region 29513	812 bp downstream
Tssr29514	transcription start site region 29514	686 bp downstream
Tssr33522	transcription start site region 33522	329 bp upstream