rs30305115 SNP Detail

Summary

• ID
  rs30305115
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77862081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGCAGCG CGGGGCAGGG
  GCGGACGGCG CCATCTTGCA CCGTGGCTGC GGAGCAGCGC GGACGGCCGA GGGGCTTTGC
  TGCGGGCCTT CGGGGCGCGC GCGGCGGGGC GGGGGTCTGG GACCTCGGCG TGGCTGAGCA
  AGGGGGCTCT AGGAGGGATC TGGGCTTGGG GTGAGAGCGG GCCTGGAGGT GAAGGTCAGG
  S
  TGTGTGCCCT GCTCGTCTGG CCTGCCCGGA AGCTTGTCCT GGGGTCCGGC TCTGCTGAAG
  GTCAGAGGAG CTGTCAGCCG TCTTGTGCCG GAGGAGGAGG AGGAGGCGAG CCTGACATTG
  TGTGAAGGTC AACAGGCCGG AGCAGTTCAC CTCTGCTCCG AGGTCAATCC AAGGGAAAGG
  AATAAATGAA AGTGACTCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39666971	mCV22975779	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
ss147555363	ENSMUSSNP6698671	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30305115					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77862081 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	within coordinates
Cpgi10281	CpG island 10281	within coordinates
Haus1	HAUS augmin-like complex, subunit 1	495 bp upstream
Rr393942	regulatory region 393942	within coordinates
Rr541176	regulatory region 541176	642 bp distal
Rr541177	regulatory region 541177	506 bp distal
Rr541178	regulatory region 541178	415 bp distal
Rr541179	regulatory region 541179	within coordinates
Tssr152041	transcription start site region 152041	375 bp downstream
Tssr152042	transcription start site region 152042	1407 bp upstream