rs30305141 SNP Detail

Summary

• ID
  rs30305141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10611741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAGCCA GGAATTATAT
  TAGTGAACCA GCCGACTTCC ATGTTAGACT TGAAAGAGCC AAAGAACCAT CTTATAGTAA
  AGACAAGCTA GACTCACTCC TCTTTATGAT TGATTAAGCC TGTTTCTCAA GGATTGCGCT
  ATGCCCCACC TGTAGCCTTA ACTACAAATG GTTCAGTACT GCCTGTGCCA GGGAAAGGCA
  R
  CCACATCCTT ATTTTGCAAA GTTGTTCATA AGCATCTTGC AAGCCTACCG TTGTTTCATA
  GGTTCTTATG ACTATTGTCG CTACGCCCAC CTTGCACTCA AGTCTTTGTT TCAGAAGGTT
  CTTATGTCTA ATGTTTAACT TGTTATGCTT ACATGCTCCT GGTACCTGGT TTATTTTGCC
  TGCCAACCCC CACCCCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39667370	mCV27569843	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss146607098	ENSMUSSNP4295387	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss325524301	CHEV_18_10611739	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30305141					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10611741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	1093 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	1389 bp upstream
Rr533778	regulatory region 533778	1643 bp distal
Rr533779	regulatory region 533779	1965 bp distal
Rr533780	regulatory region 533780	899 bp distal
Rr533781	regulatory region 533781	1605 bp distal
Rr533782	regulatory region 533782	1299 bp distal
Tssr152429	transcription start site region 152429	1625 bp upstream
Tssr152430	transcription start site region 152430	1597 bp upstream
Tssr152431	transcription start site region 152431	1453 bp upstream
Tssr152432	transcription start site region 152432	1429 bp upstream
Tssr152433	transcription start site region 152433	1378 bp upstream