rs30306166 SNP Detail

Summary

• ID
  rs30306166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129856473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATT CCTTTCAGCT CACAGGCTCC
  Y
  CTCCCCTCAG CTACTCAGTC TCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45414741	mCV25394812	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135891470	ENSMUSSNP6749234	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320964118	CHEV_3_129765742	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30306166					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129856473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13821	CpG island 13821	1439 bp distal
Sec24b	SEC24 homolog B, COPII coat complex component	1271 bp upstream
Tssr35655	transcription start site region 35655	1998 bp upstream
Tssr35656	transcription start site region 35656	1975 bp upstream
Tssr35657	transcription start site region 35657	1959 bp upstream
Tssr35658	transcription start site region 35658	1794 bp upstream
Tssr35659	transcription start site region 35659	1316 bp upstream
Tssr35660	transcription start site region 35660	1239 bp upstream