rs30306496 SNP Detail

Summary

• ID
  rs30306496
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75366610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGT CATCCAGGTG TGTACTGGGT
  W
  CATGCGTGTT GTGGAACTTG TATTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39171608	mCV24265496	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss324673210	CHEV_14_75528977	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30306496					SNP	T	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75366610 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	1351 bp proximal
Cpgi6737	CpG island 6737	1924 bp proximal
Gm62951	predicted gene, 62951	1200 bp downstream
Lcp1	lymphocyte cytosolic protein 1	1960 bp upstream
Lrrc63	leucine rich repeat containing 63	within coordinates
Rr297500	regulatory region 297500	790 bp proximal
Tssr4477	transcription start site region 4477	1457 bp downstream
Tssr126606	transcription start site region 126606	1937 bp upstream
Tssr129761	transcription start site region 129761	1416 bp downstream
Tssr129762	transcription start site region 129762	1438 bp downstream
Tssr129763	transcription start site region 129763	1474 bp downstream
Tssr129764	transcription start site region 129764	1738 bp downstream
Tssr129765	transcription start site region 129765	1835 bp downstream