rs30306736 SNP Detail

Summary

• ID
  rs30306736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22037535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGGGGACTC AGCTTGACCC CGAGAGAAGG TCCTTACCTC GATGGGGCTG ACGGGCGTGG
  AAGGCAGGGG TTGCAAATAC TCTGGGTGCA AAATGTGGCC AGTCCGTGCC GTCAGCATCT
  TCAGCACCTT GATGGGCAGG CGGTTAGCCT GGCGCAGGGG GTCAGAGGGG GGCACAGCGT
  GCACAAAAGG CTTGGTGCTG CCGGCCGGGG AGGAGCCTGG GCCGTGGCCG GAGCAATTTC
  CAGAAAGCGC GCTGGTCCAG GCAGGGTCCG CGCTGCCGCC GCCGCTGCCG CCGCCGCCGC
  Y
  GCCGCCGCCG CCGCCGCCGC TGTGCTTACT GCTTCTTAGG GCAGAAAGCG AGGGCGCTGT
  GCTCATGACC CACCCGCGCG CATGGGAGCA GCGGGGGGAG GGCTCCGAGA TGCGCGGGGC
  GGGCTCGGGG CTGCGCGCTC GCCCGGGGAG CGGGAGCAGC TGGAGGAGGA GCTGGCGCGG
  CGGACGCGGG AGCCCCGCGC GCTTTCTCGC CGCCGGGAGC CAGAAGCGAA TAATCCTGGG
  TGGCCCGCAG CGGAGCCGTG ATGGGGCTAG AAGAGCAGGA CAGACTGCGG GAGTGTCCCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39171705	mCV22932366	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30306736					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22037535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6225	CpG island 6225	781 bp distal
Cpgi6226	CpG island 6226	within coordinates
Cpgi6227	CpG island 6227	1452 bp proximal
Rr488632	regulatory region 488632	1275 bp distal
Rr488633	regulatory region 488633	1192 bp distal
Tssr127698	transcription start site region 127698	1810 bp upstream
Tssr127699	transcription start site region 127699	26 bp downstream
Tssr127700	transcription start site region 127700	89 bp downstream
Tssr127701	transcription start site region 127701	394 bp downstream
Tssr127702	transcription start site region 127702	418 bp downstream
Tssr127703	transcription start site region 127703	527 bp downstream
Tssr127704	transcription start site region 127704	947 bp downstream
Zfp503	zinc finger protein 503	within coordinates