rs30307185 SNP Detail

Summary

• ID
  rs30307185
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123301459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGAAGATT CCCTGTAAGT
  TGACCAGAGA CGATCTCAAC CACTACAGTA CCTGCAAGAA AAAAAAAAAG GCCCATTACA
  GAATATCCGT GACTATACTA CGGGCTGTTT ACTTATGTTA ATGTCAGCAC AAGAGCAAAC
  TTCACCCTAA CAGTAAAGGC CCACTCACTA CCCAGAACCG CGAAAACACC ACAAAAATGA
  R
  TCTTACCTTA ACACTTCCTC CACTGTTCAA CAGCAACGGG TCCCGGCGTT TCCTAGAAAT
  ATTTCAATAC TAGTTTAGAA AACTGAAGTC CATTTTTCTA GCGTCGTGTA GACTCTTACA
  ATCTTAGAAT GTCACTTGCT CAAGTCAGAA TCTGGTACCA ATGAAATGGT GACAGCTTTG
  CCAATAACAA GAACATGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45414950	mCV24054462	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss135766561	ENSMUSSNP2077990	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320920394	CHEV_3_123210728	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30307185					SNP	A	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123301459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	128 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	1213 bp downstream
Rr397991	regulatory region 397991	776 bp downstream
Rr584523	regulatory region 584523	891 bp distal
Rr584524	regulatory region 584524	756 bp distal
Rr584525	regulatory region 584525	564 bp proximal
Rr584526	regulatory region 584526	1109 bp proximal
Rr584527	regulatory region 584527	1500 bp proximal
Snhg8	small nucleolar RNA host gene 8	within coordinates
Snora24	small nucleolar RNA, H/ACA box 24	127 bp downstream
Tssr31551	transcription start site region 31551	740 bp upstream
Tssr31552	transcription start site region 31552	778 bp upstream
Tssr35502	transcription start site region 35502	520 bp downstream
Tssr35503	transcription start site region 35503	1105 bp downstream