rs30307369 SNP Detail

Summary

• ID
  rs30307369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:62245764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTA ATAAGGATTT GGAATTTACT
  Y
  CTTGTTCGAT ATTTTATTCT ACATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45414567	mCV24509510	ABI	CRAMUS_MOUSE	f	SNP		C					T		T
ss60415944	NES15920338	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C		C	T	C	T		T	C		C
ss135231163	ENSMUSSNP5294638	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320789360	CHEV_3_62142265	CHEVERUD	SCREENING_POP	f	SNP												C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30307369					SNP	T	C	T	T	T	C	T	C	T	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415944	NES15920338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62245764 () rs orientation: forward

Symbol	Name	Function Class
9330121J05Rik	RIKEN cDNA 9330121J05 gene	within coordinates
Arhgef26	Rho guanine nucleotide exchange factor 26	1 bp upstream
Cpgi13214	CpG island 13214	202 bp proximal
Rr77681	regulatory region 77681	36 bp proximal
Tssr29350	transcription start site region 29350	598 bp upstream
Tssr29351	transcription start site region 29351	681 bp upstream
Tssr29352	transcription start site region 29352	1230 bp upstream
Tssr29353	transcription start site region 29353	1703 bp upstream