rs30308306 SNP Detail

Summary

• ID
  rs30308306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:50673924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCTCATC AGGGGTCATT CAGTAAGAAC ATAACAATGC
  TCTTTGACTC CAGGAATGCA AAGTGTAAGC TATGCTGGGC TTTTCAGATT TGCCACTGAT
  R
  GAAAGCGGAG AGGAGTGTTT GACTAGGAGA CATAGGGTTT TGTTTGGAGA CTGGATCATG
  CTCTGTAGTC TACTATATAG CCCATAGGCA GGTCTCAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46394284	mCV25205983	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss47708430	NES11320987	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G		A	G	A	A		G	G	A		A
ss136481038	ENSMUSSNP2828759	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss322959951	CHEV_9_50570729	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30308306					SNP	G	G	A	G	G	G	A	A	G	A	A	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47708430	NES11320987	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50673924 () rs orientation: forward

Symbol	Name	Function Class
Cfap68	cilia and flagella associated protein 68	mRNA-UTR
Gm67659	predicted gene, 67659	404 bp upstream
Rr678731	regulatory region 678731	815 bp proximal
Rr678732	regulatory region 678732	904 bp proximal