rs30308916 SNP Detail

Summary

• ID
  rs30308916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60437007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTTTTTTGGA GAGGGGTTGG
  R
  TTTGTTGGTT TCATTAAACA TTTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45415764	mCV22695781	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss135219422	ENSMUSSNP2560640	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss320786572	CHEV_3_60333508	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30308916					SNP	G	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60437007 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr577418	regulatory region 577418			427 bp distal
Tssr29294	transcription start site region 29294			1452 bp downstream
Tssr29295	transcription start site region 29295			1330 bp downstream
Tssr29296	transcription start site region 29296			1270 bp downstream
Tssr29297	transcription start site region 29297			1091 bp downstream
Tssr29298	transcription start site region 29298			1065 bp downstream
Tssr29299	transcription start site region 29299			807 bp downstream
Tssr29300	transcription start site region 29300			329 bp downstream
Tssr29301	transcription start site region 29301			133 bp downstream
Tssr29302	transcription start site region 29302			5 bp downstream
Tssr29303	transcription start site region 29303			115 bp upstream
Tssr29304	transcription start site region 29304			490 bp upstream
Tssr29305	transcription start site region 29305			733 bp upstream
Tssr29306	transcription start site region 29306			1648 bp upstream