rs30309989 SNP Detail

Summary

• ID
  rs30309989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:106093912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCTAGG ATGCAAATTG
  TTTCATTCTT CACAGAACAT GCAGAGACAT TCACTCTGGC TCTTATACAT GGTACAGTTA
  ACATAAAGAT GCAGTCCTTC ATGGGTAAGC TCTCCTCTTA CAGACAGAGA CACGCAGACC
  CGTCACCAAG TCATCATGTT AGCTTATCAT TTCATTTATT CCAATAGTGT TACCAGCTAA
  Y
  TTGGGTGTTT CATGGCCACA TCAAATTCAT CTCTGCACAT TTGGTGTCCC CAACAAGATA
  GGTTCGCAGT GGCTGCACAT AGAAACTTCT TTCTACTTTT ACAGTGATGC AAAACAGATA
  ATGGAGGCTT CGCAGTCCAG TTTTCAGTTA GTGTGTAAGT AGGCACAATG AAATCTCATC
  ATTTAATACC TACTGCTACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39173057	mCV24683267	ABI	CRAMUS_MOUSE	f	SNP		C	T					T	T
ss62559018	NES17102185	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T		T	T	T	T
ss146767788	ENSMUSSNP88817	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30309989					SNP	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62559018	NES17102185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:106093912 () rs orientation: forward

Symbol	Name	Function Class
Gm48970	predicted gene, 48970	within coordinates
Gm63380	predicted gene, 63380	1159 bp downstream
Rr390111	regulatory region 390111	1738 bp upstream