rs30310800 SNP Detail

Summary

• ID
  rs30310800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45315759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC CCACTGTATA GATGACAAGA
  Y
  AGACATGGAG AGATAAACAA ATCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46394391	mCV25163692	ABI	CRAMUS_MOUSE	f	SNP		C	T	C
ss136411237	ENSMUSSNP3953360	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322943296	CHEV_9_45212544	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30310800					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45315759 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fxyd2	FXYD domain-containing ion transport regulator 2			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Gm68814	predicted gene, 68814			within coordinates
Rr677905	regulatory region 677905			948 bp proximal
Rr677906	regulatory region 677906			1285 bp proximal
Tssr84783	transcription start site region 84783			1887 bp downstream
Tssr84784	transcription start site region 84784			1835 bp downstream
Tssr84785	transcription start site region 84785			1303 bp downstream
Tssr84786	transcription start site region 84786			1272 bp downstream
Tssr84787	transcription start site region 84787			1251 bp downstream
Tssr84788	transcription start site region 84788			1220 bp downstream
Tssr84789	transcription start site region 84789			1193 bp downstream
Tssr84790	transcription start site region 84790			1474 bp upstream
Tssr84791	transcription start site region 84791			1605 bp upstream
Tssr84792	transcription start site region 84792			1653 bp upstream