rs30310945 SNP Detail

Summary

• ID
  rs30310945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127202220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTCCCCC AGAACAGGGA
  AGGGTGGCAA CCACTACATG GTCCTTTGGC ACAAACACAA CCTGAATCTT AAGAAGCAGT
  GATGTTGACT GAGGGAGTTC CCACCCTCTC TGCGCCCCTC GCTTGCCACA GAGTAAACAA
  GTCCACACAG GGTTAAGAGA ATCTAAAATC AATTCACTTT AATCGGGTCT AAAAGAAAAA
  Y
  CTGCCTTGCA ATTACAAAAG AAAAAGGAAA AACCCCCGAA ACTGCACATC AGAAAAACAC
  ATCACATGAA GAACAAACCA AAATCGGGGC TGGGGACCAT CTTGAACATC GGGCGCTGCC
  TTTGACCTCC CGGGATGGCA TATAAAACCA TGCTGCCCAG CCCAGATCCC GAGAGCGATT
  TACAAAGGGC TTCCAACATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45418099	mCV23997488	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss320953857	CHEV_3_127111489	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30310945					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127202220 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	116 bp proximal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	1273 bp distal
Rr584773	regulatory region 584773	within coordinates
Rr584774	regulatory region 584774	386 bp proximal
Tssr35571	transcription start site region 35571	309 bp downstream
Tssr35572	transcription start site region 35572	366 bp downstream
Tssr35573	transcription start site region 35573	415 bp downstream
Tssr35574	transcription start site region 35574	443 bp downstream
Tssr35575	transcription start site region 35575	473 bp downstream