rs30311592 SNP Detail

Summary

• ID
  rs30311592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:37399820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTC CCAAATCCCA GTGGACTGAG
  R
  TACCGGAGTA GCTATTCTGC TGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46394403	mCV23154099	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss136310477	ENSMUSSNP2463202	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30311592					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37399820 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BB236558	expressed sequence BB236558			183 bp downstream
Cpgi21578	CpG island 21578			290 bp proximal
Gm69832	predicted gene, 69832			within coordinates
Msantd2	Myb/SANT-like DNA-binding domain containing 2			mRNA-UTR
				Noncoding-Transcript-Variant
Rr676695	regulatory region 676695			7 bp proximal
Rr676696	regulatory region 676696			724 bp proximal
Rr676697	regulatory region 676697			1083 bp proximal
Tssr2827	transcription start site region 2827			538 bp upstream
Tssr84392	transcription start site region 84392			246 bp upstream
Tssr84393	transcription start site region 84393			464 bp upstream
Tssr84394	transcription start site region 84394			499 bp upstream
Tssr84395	transcription start site region 84395			757 bp upstream
Tssr88840	transcription start site region 88840			1305 bp downstream