rs30311875 SNP Detail

Summary

• ID
  rs30311875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90715796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA CCCTGAAACA ATGTCTGCCG
  Y
  ACATAGCACA AGTTAATGAG GAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45914698	mCV22369305	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss133379023	ENSMUSSNP1420426	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321852510	CHEV_6_90688808	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30311875					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90715796 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17726	CpG island 17726	1314 bp distal
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr399763	regulatory region 399763	776 bp downstream
Rr634306	regulatory region 634306	1231 bp distal
Rr634307	regulatory region 634307	1183 bp distal
Rr634308	regulatory region 634308	1684 bp proximal
Tssr62041	transcription start site region 62041	1997 bp upstream