rs30312845 SNP Detail

Summary

• ID
  rs30312845
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8545128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTGGTTT AGTCCCTGGG
  AGCTCTGGGG GTCTGGTTGG CTGATGTTGT TCTTCCTATG GGGTTGTAAA CTCTTTCAGC
  TCCTTCAGTC CTTTCTCCAA CTCCTCCATT GGGGGCCCTG TGCTCAGTCC AATGGTTGGC
  TGCGATCATC GCCTCTGTAC TTGTCAGGCT GTGGCAGAGC CTCTCAGGAG ACAGCTCTAT
  M
  AGGCTCCTGT TGGCACGCAC TTCTTGGCAT CCACAATAGT GTCTGCATTT GGTGACTGTA
  GATTGTTTTT TAAAAATGGA GATAATGGTT AGGAAGCATT TTTGAAAATT TTTTAAGAAA
  AGTTTGCACA GGTCTTGTAA AGTAGCCTAC AGAGTATTAG CAACATGAAT TATGTTGAAG
  TTTTTTTTTT TTTTTTTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45917386	mCV24763399	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss132971093	ENSMUSSNP4903878	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30312845					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8545128 () rs orientation: forward

Symbol	Name	Function Class
Glcci1	glucocorticoid induced transcript 1	within coordinates
Gm45062	predicted gene 45062	within coordinates
Tssr54920	transcription start site region 54920	541 bp downstream
Tssr54921	transcription start site region 54921	197 bp upstream