rs30312968 SNP Detail

Summary

• ID
  rs30312968
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:144219882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAACCACA TTCGCAGAGG
  CTGCAATACT GACATCAGTC TTACCTGGCT TTGGAAGCAG TGGTGAGGGA GAGAGACCAG
  AAGTGCTCTT TCCTTTTCTG AGTAGCTTGT GGAACACAGC TCTCGGCAGT AAATGCTTCA
  TCATTTGGTC AAGTGGTACT TCAGGGAAGT TTGGAACAAA CTTGTTTCTG ATCATTAATT
  M
  CATGGCTTAC ACAGATAGCA TAGCTTCCAG GGCAAGCAGA TTTTTAAGAA ATAAAGAAGG
  TAAGGCAAAG TGCTCCGTCA AGTCTATACT ATATAACTGG TGAAAGAAAC TGAGAGAGAA
  CAAGAGACAA GCATTTCCTG CAACTAAATC AATGGCGCAT GACGTGACGA TGGCAACCTT
  CCATCGGCAC TGCTTACAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45417935	mCV24949311	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss47020096	NES10845986	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C		C	C	C	C	C	C	C	C	C
ss136032039	ENSMUSSNP5049949	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30312968					SNP	A	A	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47020096	NES10845986	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144219882 () rs orientation: forward

Symbol	Name	Function Class
Hs2st1	heparan sulfate 2-O-sulfotransferase 1	Intron
Rr586664	regulatory region 586664	517 bp distal