rs30313406 SNP Detail

Summary

• ID
  rs30313406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144993377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTG TCTCCCAAAT GTCCAGTAAG
  Y
  CGTCTAGAAC GAGGGTTTAA GCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45915809	mCV23990309	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
ss48141280	NES11826483	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	T		T	T	T		T	C	C	C		C
ss133960853	ENSMUSSNP2223995	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss322067432	CHEV_6_144996171	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30313406					SNP	C	C	C	T	C	C	T	T	T	T	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141280	NES11826483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144993377 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	462 bp proximal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Tssr2055	transcription start site region 2055	1396 bp downstream
Tssr59519	transcription start site region 59519	887 bp upstream
Tssr64030	transcription start site region 64030	128 bp upstream
Tssr64031	transcription start site region 64031	97 bp upstream
Tssr64032	transcription start site region 64032	37 bp upstream
Tssr64033	transcription start site region 64033	within coordinates
Tssr64034	transcription start site region 64034	13 bp downstream
Tssr64035	transcription start site region 64035	74 bp downstream
Tssr64036	transcription start site region 64036	934 bp downstream
Tssr64037	transcription start site region 64037	950 bp downstream
Tssr64038	transcription start site region 64038	1005 bp downstream
Tssr64039	transcription start site region 64039	1025 bp downstream
Tssr64040	transcription start site region 64040	1044 bp downstream
Tssr64041	transcription start site region 64041	1059 bp downstream
Tssr64042	transcription start site region 64042	1079 bp downstream
Tssr64043	transcription start site region 64043	1098 bp downstream
Tssr64044	transcription start site region 64044	1158 bp downstream
Tssr64045	transcription start site region 64045	1188 bp downstream